[1]张杰伟,任飞,张中保,等.桃磷酸肌醇特异性磷脂酶 C 基因家族鉴定与分析[J].江苏农业学报,2017,(01):185-190.[doi:10.3969/j.issn.1000-4440.2017.01.030 ]
 ZHANG Jie-wei,REN Fei,ZHANG Zhong-bao,et al.Genome-wide analysis and identification of phosphoinositide-specific phospholipase C gene family in Lovell peach (Prunus persica L.)[J].,2017,(01):185-190.[doi:10.3969/j.issn.1000-4440.2017.01.030 ]
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桃磷酸肌醇特异性磷脂酶 C 基因家族鉴定与分析()
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江苏农业学报[ISSN:1006-6977/CN:61-1281/TN]

卷:
期数:
2017年01期
页码:
185-190
栏目:
园艺
出版日期:
2017-02-28

文章信息/Info

Title:
Genome-wide analysis and identification of phosphoinositide-specific phospholipase C gene family in Lovell peach (Prunus persica L.)
作者:
张杰伟任飞张中保谢华魏建华
(北京市农林科学院/农业基因资源与生物技术北京市重点实验室,北京100097)
Author(s):
ZHANG Jie-weiREN FeiZHANG Zhong-baoXIE HuaWEI Jian-hua
(Beijing Academy of Agriculture and Forestry Sciences/Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing, 100097, China)
关键词:
磷酸肌醇特异性磷脂酶C进化分析基因家族
Keywords:
PI-PLCPrunus persicaphylogeny analysisgene family
分类号:
S662.1
DOI:
10.3969/j.issn.1000-4440.2017.01.030
文献标志码:
A
摘要:
为了对桃(Prunus persica var. Lovell)中PI-PLC 家族基因进行系统分析,利用桃基因组数据库,通过生物信息学手段,鉴定桃PI-PLC 家族基因的基因结构、染色体定位和编码蛋白,通过序列比对进行进化和分类分析。结果表明,桃中含有5 个PI-PLC 家族基因,预测他们均含有9个外显子,分布于桃的2 条染色体上。保守结构域分析结果显示,桃中PI-PLC 蛋白均含有4个保守的EF、X、Y和C2结构域。进化树分析结果表明桃PI-PLC家族基因可分为4 个亚家族。
Abstract:
In order to analyze PI-PLC gene family in Lovell peach (Prunus persica L.), bioinformatics method was used based on the peach genome database to obtain peach PI-PLC family genes structure and their positions on chromosome and duplication information. PI-PLC proteins were classified according to their phylogenetic relationship. The results showed that five PI-PLC genes existed in the peach (P.persica L.) genome and located on two chromosomes. The results of conserved domains indicated that all peach PI-PLC proteins contained four conserved domains (EF, X, Y and C2). Phylogenetic analysis revealed that the peach PI-PLC gene family could be divided into four groups.

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备注/Memo

备注/Memo:
收稿日期:2016-03-09 基金项目:北京市农林科学院青年科研基金项目(QNJJ201416);北京市科技计划项目(Z151100001015005);北京市农林科学院科技创新能力建设专项(KJCX20140202) 作者简介:张杰伟(1982-),男,山西闻喜人,博士,副研究员,研究方向为林木分子生物学。(Tel)010-51503196-807;(E-mail)jwzhang919@163.com 通讯作者:谢华,(Tel)010-51503832;(E-mail)xiehua@baafs.net.cn;魏建华,(Tel)010-51503830;(E-mail)weijianhua@baafs.net.cn
更新日期/Last Update: 2017-04-12