[1]周仙莉,滕长才,张红岩,等.蚕豆遗传图谱与QTL定位研究进展[J].江苏农业学报,2021,(01):237-245.[doi:doi:10.3969/j.issn.1000-4440.2021.01.031]
 ZHOU Xian-li,TENG Chang-cai,ZHANG Hong-yan,et al.Research advance of genetic linkage map and QTL location in Vicia faba L.[J].,2021,(01):237-245.[doi:doi:10.3969/j.issn.1000-4440.2021.01.031]
点击复制

蚕豆遗传图谱与QTL定位研究进展()
分享到:

江苏农业学报[ISSN:1006-6977/CN:61-1281/TN]

卷:
期数:
2021年01期
页码:
237-245
栏目:
综述
出版日期:
2021-02-28

文章信息/Info

Title:
Research advance of genetic linkage map and QTL location in Vicia faba L.
作者:
周仙莉12滕长才2张红岩12林夕12刘玉玲12吴小燕12侯万伟2刘玉皎123
(1.青海大学,青海西宁810016;2.青海省农林科学院,青海西宁810016;3.青海大学省部共建三江源生态与高原农牧业国家重点实验室,青海西宁810016)
Author(s):
ZHOU Xian-li12TENG Chang-cai2ZHANG Hong-yan12LIN Xi12LIU Yu-ling12WU Xiao-yan12HOU Wan-wei2LIU Yu-jiao123
(1.Qinghai University, Xining 810016, China;2.Qinghai Academy of Agricultural and Forestry Sciences, Xining 810016, China;3.The Co-constructing State Key Laboratory of Three Rivers Sources Ecology and Plateau Agriculture and Animal Husbandry, Qinghai University, Xining 810016, China)
关键词:
蚕豆遗传连锁图谱QTL定位
Keywords:
Vicia faba L.genetic linkage mapsquantitative trait locus (QTL) location
分类号:
S529
DOI:
doi:10.3969/j.issn.1000-4440.2021.01.031
文献标志码:
A
摘要:
作为一种粮食、蔬菜、饲料、绿肥兼用的食用豆类,蚕豆在人类健康、土壤改良等方面发挥了重要作用。高密度遗传图谱的构建是蚕豆基因组研究的基础和主要手段,至今共构建了24张蚕豆遗传图谱,最为饱和的图谱覆盖长度为1 439 cM,平均遗传距离为0.8 cM。同时基于图谱开展了产量相关性状、品质相关性状以及抗性相关性状的QTL定位,有效地促进了蚕豆的遗传与基因研究。
Abstract:
As a kind of edible legumes which can be used as food, vegetables feed and green manure, Vicia faba L. plays a crucial role in human health and soil improvement. The construction of high-density genetic linkage map is the basis and main method for genome research in V. faba L.. 24 genetic maps have been constructed so far, in which the most saturated map spanned 1 439 cM with an average genetic distance of 0.8 cM. Quantitative trait locus (QTL) mapping on yield-related traits, quality-related traits, and resistance-related traits had been carried out, which effectively promoted inheritance and gene research in V. faba L..

参考文献/References:

[1]叶茵. 中国蚕豆学 [M]. 北京: 中国农业出版社, 2003.
[2]刘玉皎. 调结构,转方式,促进青海蚕豆产业转型升级 [J]. 青海科技, 2018, 25(1): 35-37.
[3]周俊玲,张蕙杰. 世界蚕豆生产及贸易形势分析 [J]. 世界农业, 2016(11): 107-111.
[4]冯贝贝,靳娟,杨磊,等. 冬枣 (Ziziphus jujube) 果实重要性状和遗传图谱构建及QTL定位研究进展 [J]. 分子植物育种, 2019, 17(24): 8184-8190.
[5]姜俊烨. 蚕豆微核心种质构建及SSR遗传连锁图谱加密 [D]. 北京:中国农业科学院, 2014.
[6]COOPER J W, WILSON M H, DERKS M F L, et al. Enhancing faba bean (Vicia faba L.) genome resources [J]. Journal of Experimental Botany, 2017, 68(8): 1941-1953.
[7]瞿华香,张玉烛,张岳,等. 分子标记辅助选择育种研究进展 [J]. 作物研究, 2008, 22 (S1): 355-358.
[8]VAN DE VEN W T G, WAUGH R, DUNCAN N, et al. Development of a genetic linkage map in Vicia faba using molecular and biochemical techniques [J]. Aspects of Applied Biology, 1991, 27: 49-54.
[9]SUSO M J, MORENO M T. Genetic control of electrophoretic variation for glutamate oxalacetate transaminase (GOT) in Vicia faba L.[J]. Fabis Newsletter Faba Bean Information Service, 1982, 5: 14.
[10]CABRERA A, CUBERO J I, MARTIN A. Genetic mapping using trisomics in Vicia faba L. [J]. Fabis Newsletter Faba Bean Information Service, 1989, 23: 5-7.
[11]SJKDIN J. Induced translocation in Vicia faba L. [J]. Hereditas, 1971, 68: 1-34.
[12]TORRES A M, WEEDEN N F, MARTIN A. Linkage among isozyme, RFLP and RAPD markers in Vicia faba [J]. Theoretical and Applied Genetics, 1993, 85(8): 937-945.
[13]SATOVIC Z, TORRES A M, CUBERO J I. Genetic mapping of new morphological, isozyme and RAPD markers in Vicia faba L. using trisomics [J]. Theoretical and Applied Genetics, 1996, 93: 1130-1138.
[14]PATTO M C V, TORRES A M, KOBLIZKOVA A, et al. Development of a genetic composite map of Vicia faba using F2 populations derived from trisomics plants [J]. Theoretical and Applied Genetics, 1999, 98: 736-743.
[15]ROMN B, TORRES A M, RUBIALES D, et al. Mapping of quantitative trait loci controlling broomrape (Orobanche crenata Forsk.) resistance in faba bean (Vicia faba L.) [J]. Genome, 2002, 45(6): 1057-1063.
[16]AVILA C M, ATOVIC Z, SILLERO J C, et al. Isolate and organ-specific QTLs for ascochyta blight resistance in faba bean [J]. Theoretical and Applied Genetics, 2004, 108: 1071-1078.
[17]ELLWOOD S R, PHAN H T, JORDAN M, et al. Construction of a comparative genetic map in faba bean (Vicia faba L.); conservation of genome structure with Lens culinaris [J]. BMC Genomics, 2008, 9: 380.
[18]DAZ-RUIZ R, SATOVIC Z, AVILA C M, et al. Conrmation of QTLs controlling Ascochyta fabae resistance in different generations of faba bean (Vicia faba L.) [J]. Crop and Pasture Science, 2009, 60: 353-361.
[19]ROMN B, SATOVIC Z, POZARKOVA D, et al. Development of a composite map in Vicia faba, breeding applications and future prospects [J]. Theoretical and Applied Genetics, 2004, 108: 1079-1088.
[20]POARKOVA D, KOBLIKOVA A, ROMN B, et al. Development and characterization of microsatellite markers from chromosome 1-specific DNA libraries of Vicia faba [J]. Biologia Plantarum, 2002, 45: 337-345.
[21]AVILA C M, ATOVIC Z, SILLERO J C, et al. QTL detection for agronomic traits in faba bean (Vicia faba L.) [J]. Agriculturae Conspectus Scientificus, 2005, 70 (3): 65-73.
[22]CRUZ-IZQUIERDO S, AVILA C M, SATOVIC Z, et al. Comparative genomics to bridge Vicia faba with model and closely-related legume species: stability of QTLs for flowering and yield-related traits [J]. Theoretical and Applied Genetics, 2012, 125: 1767-1782.
[23]GUTIRREZ N, PALOMINO C, SATOVIC Z, et al. QTLs for Orobanche spp. resistance in faba bean: identification and validation across different environments [J]. Molecular Breeding, 2013, 32(4): 909-922.
[24]MA Y, BAO S Y, YANG T, et al. Genetic linkage map of Chinese native variety faba bean (Vicia faba L.) based on simple sequence repeat markers [J]. Plant Breeding, 2013, 132 (4): 397- 400.
[25]YANG T, JIANG J Y, ZHANG H Y, et al. Density enhancement of a faba bean genetic linkage map (Vicia faba) based on simple sequence repeats markers [J]. Plant Breeding, 2019, 138 (2): 207-215.
[26]KAUR S, KIMBER R B E, COGAN N O I, et al. SNP discovery and high-density genetic mapping in faba bean (Vicia faba L.) permits identication of QTLs for ascochyta blight resistance [J]. Plant Science, 2014, 217: 47-55.
[27]SALLAM A, ARBAOUI M, ELESAWI M A, et al. Identification and verification of QTL associated with frost tolerance using linkage mapping and GWAS in winter faba bean [J]. Frontiers in Plant Science, 2016, 7: 1098.
[28]WEBB A, COTTAGE A, WOOD T, et al. A SNP based consensus genetic map for synteny-based trait targeting in faba bean (Vicia faba L.) [J]. Plant Biotechnology Journal, 2016, 14: 177-185.
[29]SUDHEESH S, KIMBER R B E, BRAICH S, et al. Construction of an integrated genetic linkage map and detection of quantitative trait loci for ascochyta blight resistance in faba bean (Vicia faba L.) [J]. Euphytica, 2019, 215 (3): 42.
[30]CARRILLO-PERDOMO E, VIDAL A, KREPLAK J, et al. Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consesus map [J]. Scientific Reports, 2020, 10: 6790.
[31]ARBAOUI M, LINK W, SATOVIC Z, et al. Quantitative trait loci of frost tolerance and physiologically related trait in faba bean (Vicia faba L.) [J]. Euphytica, 2008, 164: 93-104.
[32]DAZ-RUIZ R, TORRES A M, SATOVIC Z, et al. Validation of QTLs for Orobanche crenata resistance in faba bean (Vicia faba L.) across environments and generations [J]. Theoretical and Applied Genetics, 2010, 120: 909-919.
[33]AVILA C M, RUIZ-RODRGUEZ M D, CRUZ-IZQUIERDO S, et al. Identification of plant architecture and yield-related QTL in Vicia faba L. [J]. Molecular Breeding, 2017, 37:88.
[34]SATOVIC Z, AVILA C M, CRUZ-IZQUIERDO S, et al. A reference consensus genetic map for molecular markers and economically important traits in faba bean (Vicia faba L.) [J]. BMC Genomics, 2013, 14(1): 932.
[35]CATT S C, BRAICH S, KAUR S, et al. QTL detection for flowering time in faba bean and the responses to ambient temperature and photoperiod [J]. Euphytica, 2017, 213: 125.
[36]OCAA-MORAL S, GUTIRREZ N, TORRES A M, et al. Saturation mapping of regions determining resistance to ascochyta blight and broomrape in faba bean using transcriptome-based SNP genotyping [J]. Theoretical and Applied Genetics, 2017, 130: 2271-2282.
[37]田莹莹,侯万伟,刘玉皎. 蚕豆粒型性状的遗传分析及QTL检测 [J]. 分子植物育种, 2018, 16 (4): 1174-1183.
[38]杨生华,刘荣,杨涛,等. 蚕豆种质资源种子表型性状精准评价[J]. 中国蔬菜, 2016 (10): 32-40.
[39]沙伟超. 蚕豆子叶颜色性状的SSR标记研究 [D]. 西宁:青海大学, 2017.
[40]AVILA C M, NADAL S, MORENO M T, et al. Development of a simple PCR-based marker for the determination of growth habit in Vicia faba L. using a candidate gene approach [J]. Molecular Breeding, 2006, 17: 185-190.
[41]AVILA C M, ATIENZA S G, MORENO M T, et al. Development of a new diagnostic marker for growth habit selection in faba bean (Vicia faba L.) breeding [J]. Theoretical and Applied Genetics, 2007, 115: 1075-1082.
[42]彭葵,李锦鸿,李育军,等. 蚕豆的营养与加工研究 [J]. 长江蔬菜, 2019(12): 42-45.
[43]刘珍珍,陈友霞,杨文艺,等. 未成熟蚕豆蛋白组分的分析 [J]. 食品研究与开发, 2019, 40(23): 82-86.
[44]MACAS J, DOLEZEL J, LUCRETTI S, et al. Localization of seed genes on flow-sorted field bean chromosomes [J]. Chromosome Research, 1993, 1: 107-115.
[45]MACAS J, WESCHKE W, BUMLEIN H, et al. Localization of vicilin genes via polymerase chain reaction on microisolated field bean chromosomes [J]. Plant Journal, 1993, 3: 883-886.
[46]TORRES A M, AVILA C M, GUTIERREZ N, et al. Marker-assisted selection in faba bean (Vicia faba L.) [J]. Field Crops Research, 2010, 115: 243-252.
[47]GUTIERREZ N, AVILA C M, RODRIGUEZ-SUAREZ C, et al. Development of SCAR markers linked to a gene controlling absence of tannins in faba bean [J]. Molecular Breed, 2007, 19: 305-314.
[48]GUTIERREZ N, AVILA C M, MORENO M T, et al. Development of SCAR markers linked to zt-2, one of the genes controlling absence of tannins in faba bean [J]. Australian Journal of Agricultural Research, 2008, 59: 62-68.
[49]GUTIERREZ N, AVILA C M, DUC G, et al. CAPs markers to assist selection for low vicine and convicine content in faba bean (Vicia faba L.) [J]. Theoretical and Applied Genetics, 2006, 114: 59-66.
[50]HOU W W, ZHANG X J, YAN Q B, et al. Linkage map of a gene controlling zero tannins (zt-1) in faba bean (Vicia faba L.) with SSR and ISSR markers [J]. Agronomy, 2018, 8: 80.
[51]李仁慧,闫智臣,段廷玉. 蚕豆真菌病害及其研究进展 [J]. 草业科学, 2019, 36(8): 1976-1987.
[52]孙雪梅,易红娟,杨凌峰,等. 多种杀菌剂对蚕豆霜霉病田间防治效果比较 [J]. 农药科学与管理, 2019, 40(7): 60-63.
[53]李龙,张芸,郭延平,等. 8种杀菌剂对春蚕豆赤斑病的防治效果 [J]. 植物保护, 2019, 45(3): 245-248.
[54]杜成章,龙珏臣,龚万灼,等. 蚕豆赤斑病抗性的主基因+多基因遗传分析 [J]. 植物保护, 2019, 45(6): 131-137.
[55]王海飞,宗绪晓. 蚕豆种质资源、抗病育种和 QTL 定位及抗逆性研究进展 [J]. 植物遗传资源学报, 2011, 12 (2): 259-270.
[56]ROMN B, SATOVIC Z, AVILA C M, et al. Locating genes associated with Ascochyta fabae resistance in Vicia faba[J]. Australian Journal of Agricultural Research, 2003, 54: 85-90.
[57]SILLERO J C, MORENO M T, RUBIALES D. Characterization of new sources of resistance to Uromyces viciae-fabae in a germplasm collection of Vicia faba [J]. Plant Pathology, 2000, 49: 389-395.
[58]AVILA C M, SILLERO J C, RUBIALES D, et al. Identification of RAPD markers linked to the Uvf-1 gene conferring hypersensitive resistance against rust (Uromyces viciae-fabae) in Vicia faba L. [J]. Theoretical and Applied Genetics, 2003, 107: 353-358.
[59]DAZ-RUIZ R, ROMN B, SATOVIC Z, et al. Validation of QTLs for broomrape resistance in an F6 population of faba bean [C]//AEP. Conference handbook-european conference on grain legumes with international conference on legume genomics & genetics. Dijon, France: European Association for Grain Legume Research, 2004: 122.
[60]DAZ-RUIZ R, SATOVIC Z, ROMN B, et al. QTL analysis of broomrape resistance in faba bean (Vicia faba L.) [C]//KOVACEVIC V, JOVANOVAC S. Proceedings of XL croatian symposium on agriculture. Opatija, Croatia: Faculty of Agriculture, 2005:181-182.
[61]SALEM S, ALGHAMDI H M, MIGDADI M H, et al. Faba bean genomics: current status and future prospects [J]. Euphytica, 2012, 186: 609-624.
[62]REDDY N R, RAGIMASALAWADA M, SABBAVARAPU M M, et al. Detection and validation of stay-green QTL in post-rainy sorghum involving widely adapted cultivar, M35-1 and a popular stay-green genotype B35 [J]. BMC Genomics, 2014, 15 (1): 909.
[63]SALLAM A, DHANAPAL A, LIU S. Association mapping of winter hardiness and yield traits in winter faba bean (Vicia faba L.) [J]. Crop and Pasture Science, 2015, 67: 55-68.
[64]SALLAM A, ARBAOUI M, ELESAWI M A, et al. Identification and verification of QTL associated with frost tolerance using linkage mapping and GWAS in winter faba bean[J]. Frontiers in Plant Science, 2016, 7: 1098.
[65]XIA M Z. Effects of soil drought during the generative development phase of faba bean(Vicia faba)on photosynthetic characters and biomass production[J]. Journal of Agricultural Science, 1994, 122: 67-72.
[66]KHAZAEI H, O’SULLIVAN D M, SILLANP M J, et al. Use of synteny to identify candidate genes underlying QTL controlling stomatal traits in faba bean (Vicia faba L.) [J]. Theoretical and Applied Genetics, 2014, 127 (11): 2371-2385.
[67]WANG S C, WONG D, FORREST K, et al. Characterization of polyploidy wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array [J]. Plant Biotechnology Journal, 2014, 12: 787-796.
[68]王飞飞. 大豆生育期基因TOF7的图位克隆和功能分析[D].长春:中国科学院大学(中国科学院东北地理与农业生态研究所), 2019.
[69]TORRES A M, ROMN B, AVILA C M, et al. Faba bean breeding for resistance against biotic stresses: Towards application of marker technology [J]. Euphytica, 2006, 147 (1/2): 67-80.
[70]GNANASAMBANDAM A, PAULL J G, TORRES A, et al. Impact of molecular technologies on faba bean (Vicia faba L.) breeding strategies[J]. Agronomy, 2012, 2 (3):132-166.
[71]BOREVITZ JO, CHORY J. Genomics tools for QTL analysis and gene discovery [J]. Current Opinion in Plant Biology, 2004, 7: 132-136.
[72]RISPAIL N, KAL P, KISS G B, et al. Model legumes contribute to faba bean breeding [J]. Field Crops Research, 2010, 115 (3):253-269.

相似文献/References:

[1]欧阳裕元,余东梅,杨梅.蚕豆主要农艺性状与单株产量的相关及通径分析[J].江苏农业学报,2016,(04):763.[doi:10.3969/j.issn.100-4440.2016.04.008]
 OUYANG Yu-yuan,YU Dong-mei,YANG Mei.Path analysis and correlation analysis between agronomic traits and yield in broad bean[J].,2016,(01):763.[doi:10.3969/j.issn.100-4440.2016.04.008]
[2]刘飞,杨春艳,谢建新.傅里叶变换红外光谱结合判别分析法诊断蚕豆病虫害[J].江苏农业学报,2015,(03):531.[doi:10.3969/j.issn.1000-4440.2015.03.011]
 LIU Fei,YANG Chun-yan,XIE Jian-xin.Diagnosis of diseases and pests of broad bean by Fourier transform infrared spectroscopy combining discriminant analysis[J].,2015,(01):531.[doi:10.3969/j.issn.1000-4440.2015.03.011]
[3]陈惠,唐明霞,宋居易,等.烫漂对蚕豆感官品质及过氧化物酶活性的影响[J].江苏农业学报,2015,(03):708.[doi:10.3969/j.issn.1000-4440.2015.03.038]
 CHEN hui,TANG Ming-xia,SONG Ju-yi,et al.Effect of blanching on sensory properties and activity of peroxidase in broad beans[J].,2015,(01):708.[doi:10.3969/j.issn.1000-4440.2015.03.038]
[4]涂丽琴,吴淑华,干射香,等.江苏省蚕豆上菜豆黄花叶病毒的分子鉴定[J].江苏农业学报,2019,(04):804.[doi:doi:10.3969/j.issn.1000-4440.2019.04.008]
 TU Li qin,WU Shu hua,GAN She xiang,et al.Molecular identification of bean yellow mosaic virus infecting Vicia faba from Jiangsu province[J].,2019,(01):804.[doi:doi:10.3969/j.issn.1000-4440.2019.04.008]
[5]高营,林云,袁星星,等.蚕豆VfGASA1基因的异源过表达延迟拟南芥开花[J].江苏农业学报,2021,(01):44.[doi:doi:10.3969/j.issn.1000-4440.2021.01.006]
 GAO Ying,LIN Yun,YUAN Xing-xing,et al.Heterologous overexpression of Vicia faba VfGASA1 gene delays flowering in transgenic Arabidopsis[J].,2021,(01):44.[doi:doi:10.3969/j.issn.1000-4440.2021.01.006]
[6]辛佳佳,张南峰,程华萍,等.江西省地方蚕豆种质资源遗传多样性分析及优异资源挖掘[J].江苏农业学报,2022,38(01):20.[doi:doi:10.3969/j.issn.1000-4440.2022.01.003]
 XIN Jia-jia,ZHANG Nan-feng,CHENG Hua-ping,et al.Genetic diversity analysis and excellent resources mining of local broad bean germplasm resources in Jiangxi province[J].,2022,38(01):20.[doi:doi:10.3969/j.issn.1000-4440.2022.01.003]
[7]赵娜,缪亚梅,姚梦楠,等.蚕豆种质资源籽粒表型与营养品质性状的多样性分析[J].江苏农业学报,2022,38(03):597.[doi:doi:10.3969/j.issn.1000-4440.2022.03.003]
 ZHAO Na,MIAO Ya-mei,YAO Meng-nan,et al.Diversity analysis on seed phenotypic and nutrient quality traits in faba bean germplasm resources[J].,2022,38(01):597.[doi:doi:10.3969/j.issn.1000-4440.2022.03.003]
[8]高晓晓,涂丽琴,孙枫,等.江苏蚕豆三叶草黄脉病毒的分子鉴定及全基因组结构特征分析[J].江苏农业学报,2022,38(05):1203.[doi:doi:10.3969/j.issn.1000-4440.2022.05.006]
 GAO Xiao-xiao,TU Li-qin,SUN Feng,et al.Molecular identification and genomic characterization of clover yellow vein virus isolated from broad bean in Jiangsu province[J].,2022,38(01):1203.[doi:doi:10.3969/j.issn.1000-4440.2022.05.006]
[9]周恩强,周瑶,姚梦楠,等.基于全长转录组的蚕豆WRKY基因家族分析及耐盐胁迫相关候选基因挖掘[J].江苏农业学报,2024,(01):14.[doi:doi:10.3969/j.issn.1000-4440.2024.01.002]
 ZHOU En-qiang,ZHOU Yao,YAO Meng-nan,et al.Analysis of WRKY gene family based on full-length transcriptome and mining of salt stress candidate genes in Vicia faba[J].,2024,(01):14.[doi:doi:10.3969/j.issn.1000-4440.2024.01.002]

备注/Memo

备注/Memo:
收稿日期:2020-07-02基金项目:国家重点研发计划项目(2019YFD1001300、2019YFD1001304);国家现代农业产业技术体系专项(CARS-08)作者简介:周仙莉(1995-),女,山东济宁人,硕士研究生,主要从事蚕豆种质资源研究与利用。(E-mail)18797001590@163.com通讯作者:刘玉皎,(E-mail)13997058356@163.com
更新日期/Last Update: 2021-03-15