参考文献/References:
[1]STRANGE R N, SCOTT P R. Plant disease: a threat to global food security[J]. Annual Review of Phytopathology, 2005, 43:83-116.
[2]SEIFERT K A. Progress towards DNA barcoding of fungi[J]. Molecular Ecology Resources, 2009, 9: 83-89.
[3]STACKEBRANDT E, GOEBEL B M. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology[J]. International Journal of Systematic and Evolutionary Microbiology, 1994, 44(4): 846-849.
[4]GOLDSMITH C S, MILLER S E. Modern uses of electron microscopy for detection of viruses[J]. Clinical Microbiology Reviews, 2009, 22(4): 552-563.
[5]BYSTRICKA D, LENZ O, MRAZ I, et al. Oligonucleotide-based microarray: a new improvement in microarray detection of plant viruses[J]. Journal of Virological Methods, 2005, 128(1/2): 176-182.
[6]王莉爽, 陈小均, 何海永,等. 贵州辣椒脉斑驳病毒的检测及株系分化研究[J].南方农业学报 ,2017,48(7):1220-1224.
[7]马新颖,汪琳,任鲁风,等. 10种植物病毒的基因芯片检测技术研究[J].植物病理学报, 2007,37(6):561-565.
[8]孙玉兰,李德新. 新病毒鉴定的分子生物学技术[J]. 病毒学报, 2011,27(2):170-175.
[9]LACROIX C, RENNER K, COLE E, et al. Methodological guidelines for accurate detection of viruses in wild plant species[J]. Applied and Environmental Microbiology, 2016, 82:1966-1975.
[10]张晓婷,吴祖建,林奇英,等. 双链RNA技术与植物病毒研究[J]. 云南农业大学学报, 2005, 20(4): 455-458.
[11]DALE J L. Banana bunchy top: an economically important tropical plant virus disease[J]. Advances in Virus Research, 1987, 33: 301-326.
[12]ADAMS I P, MIANO D W, KINYUA Z M, et al. Use of next-generation sequencing for the identification and characterization of Maize chlorotic mottle virus and Sugarcane mosaic virus causing maize lethal necrosis in Kenya[J]. Plant Pathology, 2013, 62(4): 741-749.
[13]OKADA R, KIYOTA E, MORIYAMA H, et al. A simple and rapid method to purify viral dsRNA from plant and fungal tissue[J]. Journal of General Plant Pathology, 2015, 81(2): 103-107.
[14]LISITSYN N, WIGLER M. Cloning the differences between two complex genomes[J]. Science, 1993, 259(5097): 946-951.
[15]战晴晴. 柴胡全长cDNA文库和遗传图谱的构建及蚕豆病毒属病毒的鉴定[D]. 哈尔滨:东北林业大学, 2010.
[16]COOPER B, ECKERT D, ANDON N L, et al. Investigative proteomics: identification of an unknown plant virus from infected plants using mass spectrometry[J]. Journal of the American Society for Mass Spectrometry, 2003, 14(7): 736-741.
[17]REYES G R, KIM J P. Sequence-independent, single-primer amplification (SISPA) of complex DNA populations[J]. Molecular and Cellular Probes, 1991, 5(6): 473-481.
[18]ALLANDER T, EMERSON S U, ENGLE R E, et al. A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species[J]. Proceedings of the National Academy of Sciences, 2001, 98(20): 11609-11614.
[19]ALLANDER T, TAMMI M T, ERIKSSON M, et al. Cloning of a human parvovirus by molecular screening of respiratory tract samples[J]. Proceedings of the National Academy of Sciences, 2005, 102(36): 12891-12896.
[20]ZHANG T, BREITBART M, LEE W H, et al. RNA viral community in human feces: prevalence of plant pathogenic viruses[J]. PLoS Biology, 2005, 4(1): e3.
[21]赵西梅. 地黄和白术病毒病病原检测及病毒全基因组序列测定与分析[D]. 晋中: 山西农业大学, 2013.
[22]BADILLO-VARGAS I E, BAKER C A, TURECHEK W W, et al. Genomic and biological characterization of Tomato necrotic streak virus, a novel subgroup 2 ilarvirus infecting tomato in Florida[J]. Plant Disease, 2016, 100(6): 1046-1053.
[23]CIUFFO M, MAMMELLA M, VALLINO M, et al. Molecular identification and biological characterization of a new potyvirus in lettuce[J]. Archives of Virology, 2016, 161(9): 2549-2554.
[24]SHAHID M S, ABOUGHANEM-SABANADZOVIC N, SABANADZOVIC S, et al. Genomic characterization and population structure of a badnavirus infecting blackberry[J]. Plant Disease, 2017, 101(1): 110-115.
[25]YASAKI M, HIRANO Y, UGA H, et al. Characterization of a new carmovirus isolated from an Adonis plant[J]. Archives of Virology, 2017, 162(2): 501-504.
[26]钱亚娟,徐毅,周琦,等. 利用深度测序技术发掘植物病毒资源[J]. 中国科学(生命科学), 2014,44(4):351 -363.
[27]BARBA M, CZOSNEK H, HADIDI A. Historical perspective, development and applications of next-generation sequencing in plant virology[J]. Viruses, 2014, 6(1): 106-136.
[28]ZENGLER K, PALSSON B O. A road map for the development of community systems (CoSy) biology[J]. Nature Reviews Microbiology, 2012, 10(5): 366.
[29]ADAMS I P, GLOVER R H, MONGER W A, et al. Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology[J]. Molecular Plant Pathology, 2009, 10(4): 537-545.
[30]GREEN K J, MOLLOV D, TRAN L T, et al. Characterization of a new tymovirus causing stunting and chlorotic mosaic in naranjilla (Solanum quitoense)[J]. Plant Disease, 2018, 102(5): 911-918.
[31]TANG J, LEBAS B, LIEFTING L, et al. Opium poppy mosaic virus, a new umbravirus isolated from Papaver somniferum in New Zealand[J]. Archives of Virology, 2016, 161(1): 197-201.
[32]PETRZIK K, PRIBYLOV J, KOLONIUK I, et al. Molecular characterization of a novel capillovirus from red currant[J]. Archives of Virology, 2016, 161(4): 1083-1086.
[33]PARDINA P E R, BEJERMAN N, LUQUE A V, et al. Complete nucleotide sequence of an Argentinean isolate of sweet potato virus G[J]. Virus Genes, 2012, 45(3): 593-595.
[34]HU Q, HOLLUNDER J, NIEHL A, et al. Specific impact of tobamovirus infection on the Arabidopsis small RNA profile[J]. PLoS ONE, 2011, 6(5): e19549.
[35]MOLNR A, CSORBA T, LAKATOS L, et al. Plant virus-derived small interfering RNAs originate predominantly from highly structured single-stranded viral RNAs[J]. Journal of Virology, 2005, 79(12): 7812-7818.
[36]朱慧,郭惠珊. 植物中病毒来源的小RNA介导的RNA沉默[J]. 中国科学(生命科学), 2012, 42(1):29-36.
[37]PANTALEO V, SALDARELLI P, MIOZZI L, et al. Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine[J].Virology,2010,408: 49-56.
[38]LI R, GAO S, HERNANDEZ A G, et al. Deep sequencing of small RNAs in tomato for virus and viroid identification and strain differentiation[J]. PLoS ONE, 2012, 7(5): e37127.
[39]何艳. 蔷薇科植物上两种未知病毒的基因组克隆及其分子特性分析[D]. 武汉:华中农业大学, 2015.
[40]HE Y, YANG Z, HONG N, et al. Deep sequencing reveals a novel closterovirus associated with wild rose leaf rosette disease[J]. Molecular Plant Pathology, 2015, 16(5): 449-458.
[41]陈莎. 深度测序鉴定玉米病毒及感病玉米组织中小RNA分析[D]. 杭州:浙江大学, 2015.
[42]ROOSSINCK M J. Deep sequencing for discovery and evolutionary analysis of plant viruses[J]. Virus Research, 2017, 239: 82-86.