PENG Si-hua,JIANG Shou-wen,SUN Dan,et al.Application of metagenomics technology in aquaculture animal virus identification[J].,2019,(01):229-237.[doi:doi:10.3969/j.issn.1000-4440.2019.01.033]





Application of metagenomics technology in aquaculture animal virus identification
PENG Si-hua1234JIANG Shou-wen234SUN Dan234WU Zhi-chao234CHEN Jie24
(1.College of Fisheries and Life Science, Shanghai Ocean University, Shanghai 201306, China;2.Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources/Shanghai Ocean University, Ministry of Education of China, Shanghai 201306, China;3.National Pathogen Collection Center for Aquatic Animals, Ministry of Agriculture of China, Shanghai 201306, China;4.International Research Center for Marine Biosciences at Shanghai Ocean University, Ministry of Science and Technology of China, Shanghai 201306, China)
aquatic animal virusmetagenomicsvirus identificationnext generation sequencing
In recent years, the occurrence of viral diseases in the production of aquaculture has become more and more serious. Therefore, in-depth research on aquatic virus has become an important issue for aquatic researchers. With the continuous development of metagenomics technology and the rapid decline in sequencing costs, aquatic animal virus identification technology based on metagenomics technology has gradually become one of the main techniques for identification of aquatic animal viruses. This article summarized the main methods for the identification of aquatic animal viruses based on metagenomics, reviews the identification process in detail, and discussed the advantages and disadvantages of the identification techniques. The development of the identification technology of aquatic animal viruses has been forecasted.


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收稿日期:2018-03-21基金项目:上海市自然科学基金项目(15ZR1420800);上海海洋大学博士科研启动项目(A2-0203-00-100313);上海海洋大学青年基金项目(A2-0203-00-100237)作者简介:彭司华( 1962-),男,湖南古丈人,博士,副研究员,主要从事生物信息学、基因组学研究。(E-mail)shpeng@shou.edu.cn
更新日期/Last Update: 2019-02-27