[1]郭冬姝,李笑,靳亚茹,等.引导编辑介导的水稻HPPD基因原位插入flag标签编码序列的遗传材料创制[J].江苏农业学报,2026,42(04):649-658.[doi:doi:10.3969/j.issn.1000-4440.2026.04.001]
 GUO Dongshu,LI Xiao,JIN Yaru,et al.Generation of rice germplasm with in situ flag tag insertion at HPPD gene mediated by prime editing[J].,2026,42(04):649-658.[doi:doi:10.3969/j.issn.1000-4440.2026.04.001]
点击复制

引导编辑介导的水稻HPPD基因原位插入flag标签编码序列的遗传材料创制()

江苏农业学报[ISSN:1006-6977/CN:61-1281/TN]

卷:
42
期数:
2026年04期
页码:
649-658
栏目:
遗传育种·生理生化
出版日期:
2026-04-30

文章信息/Info

Title:
Generation of rice germplasm with in situ flag tag insertion at HPPD gene mediated by prime editing
作者:
郭冬姝李笑靳亚茹杨郁文
(江苏省农业科学院种质资源与生物技术研究所,江苏南京210014)
Author(s):
GUO DongshuLI XiaoJIN YaruYANG Yuwen
(Institute of Germplasm Resources and Biotechnology, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China)
关键词:
水稻4-羟基苯丙酮酸双加氧酶(HPPD)引导编辑flag标签
Keywords:
rice4-hydroxyphenylpyruvate dioxygenase (HPPD)prime editingflag tag
分类号:
S511
DOI:
doi:10.3969/j.issn.1000-4440.2026.04.001
文献标志码:
A
摘要:
4-羟基苯丙酮酸双加氧酶(HPPD)是生物体内酪氨酸到质体醌和生育酚合成途径中的关键酶,同时也是重要的除草剂靶标。研究水稻HPPD基因的表达调控机制对于提高水稻非生物逆境抗性和培育抗除草剂品种具有重要意义。本研究通过引导编辑(PE)技术在水稻HPPD基因的3′端精准插入3×flag标签编码序列,转基因当代鉴定到3个发生目标片段精准插入的植株。蛋白质印迹法(Western blot)检测结果表明,融合蛋白能够正常表达。自交后代的基因型鉴定结果表明,1个株系的精准插入事件遗传到了下一代,并筛选到不含转基因元件的T1代纯合精准插入3×flag标签编码序列的植株。实时定量PCR检测结果表明,在黑暗转光照后的不同时间点,水稻HPPD基因的转录水平表现出由高到低的变化趋势,而HPPD蛋白表达丰度在不同时间点没有表现出显著差异。本研究创制的HPPD蛋白融合原位flag标签的水稻种质为研究水稻HPPD基因转录和HPPD蛋白表达的调控机制提供了重要的遗传资源和理论参考。
Abstract:
4-hydroxyphenylpyruvate dioxygenase (HPPD) is a key enzyme in the synthesis pathway of tyrosine to plastoquinone and tocopherol in organisms, and it is also an important target for herbicide. Investigation of transcriptional and translational regulatory mechanisms of HPPD gene is of great significance for improving rice abiotic stress resistance and developing herbicide-resistant rice varieties. In this study, the coding sequence of 3×flag tag was precisely inserted into the 3′ end of rice HPPD gene through prime editing (PE) technology. Three T0 generation plants with precise insertion of the coding sequence of 3×flag tag were identified. Western blot results indicated that the fusion protein of HPPD-3×flag expressed normally. The genotyping results of self-pollinated T1 generation plants indicated that the precise insertion event of one T0 generation plant was inherited to the next generation, and T1 generation homozygous plants harbouring precise insertion without transgenic elements were identified. The results of real-time quantitative PCR revealed that at different time points after the transition from dark to light, the transcriptional level of rice HPPD gene exhibited a trend from high to low, while the expression abundance of HPPD protein was comparable at different time points. The rice germplasm expressing HPPD-3×flag fusion protein in situ generated in this research provides an important genetic material for investigating the regulatory mechanisms of rice HPPD gene at translational and post-translational levels.

参考文献/References:

[1]NDIKURYAYO F, MOOSAVI B, YANG W C, et al. 4-hydroxyphenylpyruvate dioxygenase inhibitors:from chemical biology to agrochemicals[J]. Journal of Agricultural and Food Chemistry,2017,65(39):8523-8537.
[2]MITCHELL G, BARTLETT D W, FRASER T E, et al. Mesotrione:a new selective herbicide for use in maize[J]. Pest Management Science,2001,57(2):120-128.
[3]YANG Y W, ZHOU Z Z, LIU T L, et al. Multisite mutagenesis of 4-hydroxyphenylpyruvate dioxygenase (HPPD) enhances rice resistance to HPPD inhibitors and its carotenoid contents[J]. Journal of Agricultural and Food Chemistry,2024,72(40):22063-22072.
[4]PARK T K, KANG I A, PARK C H, et al. Inhibition of 4-hydroxyphenylpyruvate dioxygenase expression by brassinosteroid reduces carotenoid accumulation in Arabidopsis[J]. Journal of Experimental Botany,2022,73(5):1415-1428.
[5]SHAHRIARI A G, MAJLTH I, ALIAKBARI M, et al. Identifying critical regulators in the viral stress response of wheat (Triticum aestivum L.) using large-scale transcriptomics data[J]. Agronomy,2023,13(10):2610.
[6]FALK J O N, KRAU N, DHNHARDT D, et al. The senescence associated gene of barley encoding 4-hydroxyphenylpyruvate dioxygenase is expressed during oxidative stress[J]. Journal of Plant Physiology,2002,159(11):1245-1253.
[7]REN W W, ZHAO L X, ZHANG L D, et al. Molecular cloning and characterization of 4-hydroxyphenylpyruvate dioxygenase gene from Lactuca sativa[J]. Journal of Plant Physiology,2011,168(10):1076-1083.
[8]JIANG J S, CHEN Z H, BAN L P, et al. P-hydroxyphenylpyruvate dioxygenase from Medicago sativa is involved in vitamin E biosynthesis and abscisic acid-mediated seed germination[J]. Scientific Reports,2017,7:40625.
[9]YU X H, WEN X, DONG J Q, et al. Hydroxylation of HPPD facilitates its PUB11-mediated ubiquitination and degradation in response to oxidative stress in Arabidopsis[J]. Plant Communications,2025,6(11):101521.
[10]CHEN L, LIU R, TAN Q, et al. Improving the herbicide resistance of rice 4-hydroxyphenylpyruvate dioxygenase by DNA shuffling basis-directed evolution[J]. Journal of Agricultural and Food Chemistry,2023,71(41):15186-15193.
[11]WANG M G, ZHONG Y L, HE Y X, et al. Identifying resistant mutations in the herbicide target site of the plant 4-hydroxyphenylpyruvate dioxygenase[J]. Plant Biotechnology Journal,2025,23(1):75-77.
[12]LU Y, WANG J Y, CHEN B, et al. A donor-DNA-free CRISPR/Cas-based approach to gene knock-up in rice[J]. Nature Plants,2021,7(11):1445-1452.
[13]WANG Y, PHELPS A, GODBEHERE A, et al. Revolutionizing agriculture with CRISPR technology:applications,challenges,and future perspectives[J]. Biotechnology Journal,2025,20(9):70113.
[14]ANZALONE A V, RANDOLPH P B, DAVIS J R, et al. Search-and-replace genome editing without double-strand breaks or donor DNA[J]. Nature,2019,576:149-157.
[15]HUA K, JIANG Y W, TAO X P, et al. Precision genome engineering in rice using prime editing system[J]. Plant Biotechnology Journal,2020,18(11):2167-2169.
[16]LU Y M, TIAN Y F, SHEN R D, et al. Targeted,efficient sequence insertion and replacement in rice[J]. Nature Biotechnology,2020,38(12):1402-1407.
[17]LI J, DING J, ZHU J Y, et al. Prime editing-mediated precise knockin of protein tag sequences in the rice genome[J]. Plant Communications,2023,4(3):100572.
[18]ZHAO Y D, HUANG Z W, ZHOU X M, et al. Precise deletion,replacement and inversion of large DNA fragments in plants using dual prime editing[J]. Nature Plants,2025,11(2):191-205.
[19]LIN Q P, JIN S, ZONG Y, et al. High-efficiency prime editing with optimized,paired pegRNAs in plants[J]. Nature Biotechnology,2021,39(8):923-927.
[20]MIAO J, GUO D S, ZHANG J Z, et al. Targeted mutagenesis in rice using CRISPR-Cas system[J]. Cell Research,2013,23(10):1233-1236.
[21]靳亚茹,陈斌,王歆凯,等. 利用基因编辑产生长片段缺失创制低谷蛋白水稻种质[J]. 中国农业科学,2025,58(6):1052-1064,
[22]LIU X X, WANG Y Y, WANG H Z, et al. Generating herbicide resistant and dwarf rice germplasms through precise sequence insertion or replacement[J]. Plant Biotechnology Journal,2024,22(2):293-295.
[23]WANG Y H, ZHAO Y, BOLLAS A, et al. Nanopore sequencing technology,bioinformatics and applications[J]. Nature Biotechnology,2021,39(11):1348-1365.
[24]WU Y Y, XIAO N, CAI Y, et al. CRISPR-Cas9-mediated editing of the OsHPPD 3′ UTR confers enhanced resistance to HPPD-inhibiting herbicides in rice[J]. Plant Communications,2023,4(5):100605.

相似文献/References:

[1]王士磊,丁正权,黄海祥.水稻隐性早熟突变体ref早熟性的遗传分析和基因定位[J].江苏农业学报,2016,(04):721.[doi:10.3969/j.issn.100-4440.2016.04.001]
 WANG Shi-lei,DING Zheng-quan,HUANG Hai-xiang.Inheritance and gene mapping of recessive earliness in rice (Oryza sativa L.)[J].,2016,(04):721.[doi:10.3969/j.issn.100-4440.2016.04.001]
[2]王在满,郑乐,张明华,等.不同播种方式对直播水稻倒伏指数和根系生长的影响[J].江苏农业学报,2016,(04):725.[doi:10.3969/j.issn.100-4440.2016.04.002]
 WANG Zai-man,ZHENG Le,ZHANG Ming-hua,et al.Effects of seeding manners on lodging index and root growth of directseeded rice[J].,2016,(04):725.[doi:10.3969/j.issn.100-4440.2016.04.002]
[3]易能,薛延丰,石志琦,等.微囊藻毒素对水稻种子萌发和幼苗生长的胁迫作用[J].江苏农业学报,2016,(04):729.[doi:10.3969/j.issn.100-4440.2016.04.003]
 YI Neng,XUE Yan-feng,SHI Zhi-qi,et al.Inhibitory effect of microcystins on seed germination and seedling growth of rice[J].,2016,(04):729.[doi:10.3969/j.issn.100-4440.2016.04.003]
[4]刘凯,王爱民,严国红,等.一个水稻显性矮秆突变体的遗传特性与降株高能力[J].江苏农业学报,2016,(05):968.[doi:10.3969/j.issn.1000-4440.2016.05.002]
 LIU Kai,WANG Ai-min,YAN Guo-hong,et al.Genetic analysis and plant height reduction of a dominant dwarf mutant of rice[J].,2016,(04):968.[doi:10.3969/j.issn.1000-4440.2016.05.002]
[5]王红,杨镇,裴文琪,等.功能性微生物制剂对镉胁迫下水稻生长及生理特性的影响[J].江苏农业学报,2016,(05):974.[doi:10.3969/j.issn.1000-4440.2016.05.003]
 WANG Hong,YANG Zhen,PEI Wen-qi,et al.Growth and physiological characteristics of cadmium-stressed rice influenced by functional microorganism agent[J].,2016,(04):974.[doi:10.3969/j.issn.1000-4440.2016.05.003]
[6]孙玲,单捷,毛良君,等.基于遥感和Moran's I指数的水稻面积变化空间自相关性研究[J].江苏农业学报,2016,(05):1060.[doi:10.3969/j.issn.1000-4440.2016.05.017]
 SUN Ling,SHAN Jie,MAO Liang-jun,et al.Spatial autocorrelation of changes in paddy rice area based on remote sensing and Moran’s I index[J].,2016,(04):1060.[doi:10.3969/j.issn.1000-4440.2016.05.017]
[7]张晓忆,李卫国,景元书,等.多种光谱指标构建决策树的水稻种植面积提取[J].江苏农业学报,2016,(05):1060.[doi:10.3969/j.issn.1000-4440.2016.05.018]
 ZHANG Xiao-yi,LI Wei-guo,JING Yuan-shu,et al.Extraction of paddy rice area by constructing the decision tree with multiple spectral indices[J].,2016,(04):1060.[doi:10.3969/j.issn.1000-4440.2016.05.018]
[8]裔传灯,李玮,王德荣,等.水稻GW5基因的1212-bp Indel变异对粒形的影响[J].江苏农业学报,2016,(06):1201.[doi:doi:10.3969/j.issn.1000-4440.2016.06.001]
 YI Chuan-deng,LI Wei,WANG De-rong,et al.Effect of 1212-bp Indel variation of gene GW5 on rice grain shape[J].,2016,(04):1201.[doi:doi:10.3969/j.issn.1000-4440.2016.06.001]
[9]刘红江,陈虞雯,张岳芳,等.不同播栽方式对水稻叶片光合特性及产量的影响[J].江苏农业学报,2016,(06):1206.[doi:doi:10.3969/j.issn.1000-4440.2016.06.002]
 LIU Hong-jiang,CHEN Yu-wen,ZHANG Yue-fang,et al.Effects of planting pattern on leaf photosynthetic characteristics and yield of rice[J].,2016,(04):1206.[doi:doi:10.3969/j.issn.1000-4440.2016.06.002]
[10]郭保卫,许轲,魏海燕,等.钵苗机插水稻茎秆的抗倒伏能力[J].江苏农业学报,2016,(06):1280.[doi:doi:10.3969/j.issn.1000-4440.2016.06.014]
 GUO Bao-wei,XU Ke,WEI Hai-yan,et al.Culm lodging resistance characteristics of bowl seedling mechanical-transplanting rice[J].,2016,(04):1280.[doi:doi:10.3969/j.issn.1000-4440.2016.06.014]

备注/Memo

备注/Memo:
收稿日期:2025-11-25基金项目:江苏省重点研发计划现代农业项目(BE2022365)作者简介:郭冬姝(1988-),女,辽宁锦州人,博士,副研究员,主要从事水稻基因编辑技术和抗除草剂育种研究。(E-mail)guodongshuguodong@163.com
更新日期/Last Update: 2026-05-11