[1]王婷,郭月,彭琦,等.植物环状RNA（circRNA）的形成及作用机制研究进展[J].江苏农业学报,2024,(10):1976-1984.[doi:doi:10.3969/j.issn.1000-4440.2024.10.023]
　WANG Ting,GUO Yue,PENG Qi,et al.Research progress on mechanisms of formation and function of circular RNA (circRNA) in plants[J].,2024,(10):1976-1984.[doi:doi:10.3969/j.issn.1000-4440.2024.10.023]
点击复制

植物环状RNA（circRNA）的形成及作用机制研究进展()
分享到：

江苏农业学报[ISSN:1006-6977/CN:61-1281/TN]

卷:
期数:
2024年10期
页码:
1976-1984
栏目:
综述
出版日期:
2024-10-30

文章信息/Info

Title:
Research progress on mechanisms of formation and function of circular RNA (circRNA) in plants
作者:
王婷1; 2; 郭月2; 彭琦2; 张洁夫2; 胡茂龙1; 2; 3
(1.江苏大学生命科学学院,江苏镇江212013；2.江苏省农业科学院经济作物研究所/国家油料作物改良中心南京分中心/农业农村部长江下游棉花与油菜重点实验室/江苏省农业生物学重点实验室,江苏南京210014；3.福建农林大学农学院,福建福州350002)
Author(s):
WANG Ting1; 2; GUO Yue2; PENG Qi2; ZHANG Jiefu2; HU Maolong1; 2; 3
(1.School of Life Sciences, Jiangsu University, Zhenjiang 212013, China;2.Institute of Industrial Crops, Jiangsu Academy of Agricultural Sciences/Nanjing Sub-center, National Center of Oil Crops Improvement/Key Laboratory of Cotton and Rapeseed , Ministry of Agriculture and Rural Affairs/Provincial Key Laboratory of Agrobiology, Jiangsu Academy of Agricultural Sciences, Nanjing 210014, China;3.College of Agriculture, Fujian Agriculture and Forestry University, Fuzhou 350002, China)
关键词:
植物环状RNA; 形成机制; 作用机理
Keywords:
plant circular RNA; formation mechanism; action mechanism
分类号:
Q752
DOI:
doi:10.3969/j.issn.1000-4440.2024.10.023
文献标志码:
A
摘要:
环状RNA(Circular RNA, circRNA)是一类特殊的非编码RNA,其在生物体中广泛存在,是目前RNA领域最新的研究热点。本文通过详细对比分析动植物circRNA,综述植物circRNA的形成机制以及功能作用机理,为进一步深入研究植物circRNA提供基础。
Abstract:
Circular RNA (circRNA) is a unique class of non-coding RNA, which exists widely in various organisms and has become the latest hot research topic in the field of RNA. This paper reviewed the formation mechanism and functional mechanism of plant circRNA based on the detailed comparative analysis of plant and animal circRNA, which could provide a basis for further in-depth research on plant circRNA.

参考文献/References:

[1]ARIEL F, ROMERO-BARRIOS N, JGU T, et al. Battles and hijacks:noncoding transcription in plants[J]. Trends in Plant Science,2015,20(6):362-371.
[2]PONTING C P, OLIVER P L, REIK W. Evolution and functions of long noncoding RNAs[J]. Cell,2009,136(4):629-641.
[3]AXTELL M J. Classification and comparison of small RNAs from plants[J]. Annual Review of Plant Biology,2013,64:137-159.
[4]YE C Y, CHEN L, LIU C, et al. Widespread noncoding circular RNAs in plants[J]. New Phytologist,2015,208(1):88-95.
[5]SANGER H L, KLOTZ G, RIESNER D, et al. Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures[J]. Proceedings of the National Academy of Sciences of the United States of America,1976,73(11):3852-3856.
[6]ARNBERG A C, VAN OMMEN G J, GRIVELL L A, et al. Some yeast mitochondrial RNAs are circular[J]. Cell,1980,19(2):313-319.
[7]KOS A, DIJKEMA R, ARNBERG A C, et al. The hepatitis delta (delta) virus possesses a circular RNA[J]. Nature,1986,323(6088):558-560.
[8]NIGRO J M, CHO K R, FEARON E R, et al. Scrambled exons[J]. Cell,1991,64(3):607-613.
[9]SALZMAN J, GAWAD C, WANG P L, et al. Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types[J]. PLoS One,2012,7(2):e30733.
[10]HAN Y, LI X X, YAN Y, et al. Identification, characterization, and functional prediction of circular RNAs in maize[J]. Molecular and General Genetics,2020,295(2):491-503.
[11]ZHAO W, CHU S S, JIAO Y Q. Present scenario of circular RNAs (circRNAs) in plants[J]. Frontiers in Plant Science,2019,10:379.
[12]PHILIPS A, NOWIS K, STELMASZCZUK M, et al. Arabidopsis thaliana cbp80, c2h2, and flk knockout mutants accumulate increased amounts of circular RNAs[J]. Cells, 2020, 9(9):1937.
[13]LI H L. CircRNA:a promising all-around star in the future[J]. Epigenomics,2023,15(12):677-685.
[14]WANG H Y, WANG H H, ZHANG H X, et al. The interplay between microRNA and alternative splicing of linear and circular RNAs in eleven plant species[J]. Bioinformatics,2019,35(17):3119-3126.
[15]KRISTENSEN L S, ANDERSEN M S, STAGSTED L V W, et al. The biogenesis, biology and characterization of circular RNAs[J]. Nature Reviews Genetics,2019,20(11):675-691.
[16]LIU J, LIU T, WANG X M, et al. Circles reshaping the RNA world:from waste to treasure[J]. Molecular Cancer,2017,16(1):58.
[17]BORDOLOI K S, BARUAH P M, AGARWALA N. Identification of circular RNAs in tea plant during Helopeltis theivora infestation[J]. Plant Stress,2023,8:100150.
[18]LU T T, CUI L L, ZHOU Y, et al. Transcriptome-wide investigation of circular RNAs in rice[J]. RNA,2015,21(12):2076-2087.
[19]GAO Z, LI J, LUO M, et al. Characterization and cloning of grape circular RNAs identified the cold resistance-related Vv-circATS1[J]. Plant Physiology,2019,180(2):966-985.
[20]CHEN L, ZHANG P, FAN Y, et al. Circular RNAs mediated by transposons are associated with transcriptomic and phenotypic variation in maize[J]. New Phytologist,2018,217(3):1292-1306.
[21]ZHANG Z Y, WANG H H, WANG Y S, et al. Whole-genome characterization of chronological age-associated changes in methylome and circular RNAs in moso bamboo (Phyllostachys edulis) from vegetative to floral growth[J]. The Plant Journal,2021,106(2):435-453.
[22]WU Y, ZHA W J, QIU D F, et al. Comprehensive identification and characterization of lncRNAs and circRNAs reveal potential brown planthopper-responsive ceRNA networks in rice[J]. Frontiers in Plant Science,2023,14:1242089.
[23]ZHU C L, YUAN T T, YANG K B, et al. Identification and characterization of circRNA-associated ceRNA networks in moso bamboo under nitrogen stress[J]. BMC Plant Biology,2023,23(1):142.
[24]HE X Y, GUO S R, WANG Y, et al. Systematic identification and analysis of heat-stress-responsive lncRNAs,circRNAs and miRNAs with associated co-expression and ceRNA networks in cucumber (Cucumis sativus L.)[J]. Physiologia Plantarum,2020,168(3):736-754.
[25]XU X L, ZHANG J W, TIAN Y H, et al. circRNA inhibits DNA damage repair by interacting with host gene[J]. Molecular Cancer,2020,19(1):128.
[26]HANSEN T B, JENSEN T I, CLAUSEN B H, et al. Natural RNA circles function as efficient microRNA sponges[J]. Nature,2013,495(7441):384-388.
[27]MEMCZAK S, JENS M, ELEFSINIOTI A, et al. Circular RNAs are a large class of animal RNAs with regulatory potency[J]. Nature,2013,495(7441):333-338.
[28]LI Y W, ZHENG F X, XIAO X Y, et al. circHIPK3 sponges miR-558 to suppress heparanase expression in bladder cancer cells[J]. EMBO Reports,2017,18(9):1646-1659.
[29]ZUO J H, WANG Q, ZHU B Z, et al. Deciphering the roles of circRNAs on chilling injury in tomato[J]. Biochemical and Biophysical Research Communications,2016,479(2):132-138.
[30]LEGNINI I, TIMOTEO G D, ROSSI F, et al. circ-ZNF609 is a circular RNA that can be translated and functions in myogenesis[J]. Molecular Cell,2017,66(1):22-37.
[31]YANG Y, FAN X J, MAO M W, et al. Extensive translation of circular RNAs driven by N(6)-methyladenosine[J]. Cell Research,2017,27(5):626-641.
[32]CHEN L F, DING X L, ZHANG H, et al. Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing[J]. BMC Genomics,2018,19(1):663.
[33]WANG Y S, WANG H H, XI F H, et al. Profiling of circular RNA N(6)-methyladenosine in moso bamboo (Phyllostachys edulis) using nanopore-based direct RNA sequencing[J]. Journal of Integrative Plant Biology,2020,62(12):1823-1838.
[34]TONG W, YU J, HOU Y, et al. Circular RNA architecture and differentiation during leaf bud to young leaf development in tea (Camellia sinensis)[J]. Planta,2018,248(6):1417-1429.
[35]CHEN X, SUN S, LIU F J, et al. A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum)[J]. BMC Genomics,2019,20(1):856.
[36]WANG Y S, GAO Y B, ZHANG H X, et al. Genome-wide profiling of circular RNAs in the rapidly growing shoots of moso bamboo (Phyllostachys edulis)[J]. Plant Cell Physiology,2019,60(6):1354-1373.
[37]TAN J J, ZHOU Z J, NIU Y J, et al. Identification and functional characterization of tomato circRNAs derived from genes involved in fruit pigment accumulation[J]. Scientific Reports,2017,7(1):8594.
[38]杜志鹏,杨彦勇,蔡建明. R环的形成及其在疾病中的作用研究进展[J]. 温州医科大学学报,2022,52(3):245-252.
[39]LIU X Q, GAO Y B, LIAO J K, et al. Genome-wide profiling of circular RNAs, alternative splicing, and R-loops in stem-differentiating xylem of Populus trichocarpa[J]. Journal of Integrative Plant Biology,2021,63(7):1294-1308.

备注/Memo

备注/Memo:
收稿日期：2024-02-29基金项目：国家自然科学基金青年科学基金项目(31901503)；江苏省农业科技自主创新基金项目[CX(23)1001-1]；江苏省农业生物学重点实验室重大自主科研项目(JKLA2021-ZD02)；国家农业现代产业技术体系建设专项(CARS-12)；科技创新重大项目子课题(2023ZD0404203)作者简介：王婷(1998-),女,江苏泰兴人,硕士研究生,主要从事油菜分子遗传及比较基因组学研究。(E-mail)1433934826@qq.com。郭月为共同第一作者。通讯作者：胡茂龙,(E-mail)huml@jaas.ac.cn
更新日期/Last Update: 2024-11-21